MICE Toolkit Lite provides basic functionality for medical image processing. Based on ITK, VTK, elastix and other well known software packages, as well as bespoke functions, it allows for rapid prototyping and research within many areas concerning medical imaging and radiotherapy. Functionalities include:

  • Import of images (.bmp, .jpg, etc), DICOM, MHD, Nrrd, NifTI, OME-TIFF, ORA and CSV.
  • Database handling of DICOM using SQL with import filtering, naming conventions and anonymization.
  • A large library of image filters including denoising, sharpening, segmentation, adding noise, morphological operations and more.
  • Math operations including principal component analysis, fast Fourier transforms and custom expressions.
  • Texture analysis with Haralick features.
  • Image registration with the full elastix functionalities, as well as DEMONS and optical flow algorithms. You can also use DICOM REG-files to apply any registration created with other software.
  • Image manipulation, such resampling, translation, resolution, extracting frames or slices from stacks, image projections, creating 4D-images from 3D-images and more.
  • Extract statistics from images and time series.
  • Quantitative image tools, such as ADC, T1, T2, T2*-mapping, DCE-analysis, B1-corrections for MRI and SUV for PET.
  • Radiotherapy application tools, such as handling of RT-structures, RT-dose, DVH-analysis, gamma analysis, EUD.
  • Handling of binary masks, including Boolean algebra and morphological operations.
  • Handling of vector images and complex images, including commonly used functions such as dot and cross products, Jacobian determinant and phase/magnitude-real/imaginary conversions.
  • Advanced visualization module that can handle multiplanar reconstructions, 3D-visualization with shading, manual segmentation tools which can be used to export the structures as DICOM and multilayer image fusions.
  • Batch processing of up to 5 patients at a time for analyzing patient cohorts automatically.
  • Export of DICOM, image-files, RT-struct, STL, .csv and .xls files.

Download MICE Toolkit Lite, take a look in the included manual and watch the video-tutorials to get started for free!

Version: 1.0.9